CHAF1B

CHAF1B
Identifiers
Aliases	CHAF1B, CAF-1, CAF-IP60, CAF1, CAF1A, CAF1P60, MPHOSPH7, MPP7, chromatin assembly factor 1 subunit B
External IDs	OMIM: 601245; MGI: 1314881; HomoloGene: 48346; GeneCards: CHAF1B; OMA:CHAF1B - orthologs
Gene location (Human)
Chr.	Chromosome 21 (human)
End	36,419,015 bp
Gene location (Mouse)
Chr.	Chromosome 16 (mouse)
End	93,703,003 bp
RNA expression pattern
	Top expressed in
	secondary oocyte; ; gastrocnemius muscle; ; muscle of thigh; ; ventricular zone; ; ganglionic eminence; ; buccal mucosa cell; ; testicle; ; stromal cell of endometrium; ; gonad; ; skeletal muscle tissue;
	Top expressed in
	embryo; ; epiblast; ; genital tubercle; ; primitive streak; ; tail of embryo; ; embryo; ; abdominal wall; ; ventricular zone; ; morula; ; yolk sac;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	unfolded protein binding; histone binding; chromatin binding; protein binding;
Cellular component	cytoplasm; cytosol; CAF-1 complex; nucleoplasm; nucleus; protein-containing complex;
Biological process	regulation of transcription, DNA-templated; transcription, DNA-templated; cellular response to DNA damage stimulus; DNA replication-dependent chromatin assembly; DNA replication; cell cycle; DNA repair; nucleosome assembly;
	Sources:Amigo / QuickGO
Orthologs
	8208
	110749
	ENSG00000159259
	ENSMUSG00000022945
	Q13112
	Q9D0N7
	NM_005441
	NM_028083
	NP_005432
	NP_082359
	Wikidata
View/Edit Human	View/Edit Mouse

Chromatin assembly factor 1 subunit B is a protein that in humans is encoded by the CHAF1B gene.^[5]^[6]^[7]

Function

Chromatin assembly factor I (CAF-1) is required for the assembly of histone octamers onto newly-replicated DNA. CAF-I is composed of three protein subunits, p50, p60, and p150. The protein encoded by this gene corresponds to the p60 subunit and is required for chromatin assembly after replication. The encoded protein is differentially phosphorylated in a cell cycle-dependent manner. In addition, it is normally found in the nucleus except during mitosis, when it is released into the cytoplasm. This protein is a member of the WD-repeat HIR1 family and may also be involved in DNA repair.^[7]

Interactions

CHAF1B has been shown to interact with:

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000159259 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000022945 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Kaufman PD, Kobayashi R, Kessler N, Stillman B (Jun 1995). "The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication". Cell. 81 (7): 1105–14. doi:10.1016/S0092-8674(05)80015-7. PMID 7600578. S2CID 13502921.
^ Katsanis N, Fisher EM (Oct 1996). "The gene encoding the p60 subunit of chromatin assembly factor I (CAF1P60) maps to human chromosome 21q22.2, a region associated with some of the major features of Down syndrome". Human Genetics. 98 (4): 497–9. doi:10.1007/s004390050246. PMID 8792829. S2CID 1206979.
^ ^a ^b "Entrez Gene: CHAF1B chromatin assembly factor 1, subunit B (p60)".
^ ^a ^b Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (Apr 2002). "Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway". EMBO Reports. 3 (4): 329–34. doi:10.1093/embo-reports/kvf068. PMC 1084056. PMID 11897662.
^ Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, Zhang S, Ornatsky O, Bukhman YV, Ethier M, Sheng Y, Vasilescu J, Abu-Farha M, Lambert JP, Duewel HS, Stewart II, Kuehl B, Hogue K, Colwill K, Gladwish K, Muskat B, Kinach R, Adams SL, Moran MF, Morin GB, Topaloglou T, Figeys D (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3: 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
^ Kitagawa H, Fujiki R, Yoshimura K, Mezaki Y, Uematsu Y, Matsui D, Ogawa S, Unno K, Okubo M, Tokita A, Nakagawa T, Ito T, Ishimi Y, Nagasawa H, Matsumoto T, Yanagisawa J, Kato S (Jun 2003). "The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome". Cell. 113 (7): 905–17. doi:10.1016/s0092-8674(03)00436-7. PMID 12837248.

Ridgway P, Almouzni G (Aug 2000). "CAF-1 and the inheritance of chromatin states: at the crossroads of DNA replication and repair". Journal of Cell Science. 113 (15): 2647–58. doi:10.1242/jcs.113.15.2647. PMID 10893180.
Blouin JL, Duriaux-Sail G, Chen H, Gos A, Morris MA, Rossier C, Antonarakis SE (Apr 1996). "Mapping of the gene for the p60 subunit of the human chromatin assembly factor (CAF1A) to the Down syndrome region of chromosome 21". Genomics. 33 (2): 309–12. doi:10.1006/geno.1996.0199. PMID 8660983.
Verreault A, Kaufman PD, Kobayashi R, Stillman B (Oct 1996). "Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4". Cell. 87 (1): 95–104. doi:10.1016/S0092-8674(00)81326-4. PMID 8858152. S2CID 1416453.
Matsumoto-Taniura N, Pirollet F, Monroe R, Gerace L, Westendorf JM (Sep 1996). "Identification of novel M phase phosphoproteins by expression cloning". Molecular Biology of the Cell. 7 (9): 1455–69. doi:10.1091/mbc.7.9.1455. PMC 275994. PMID 8885239.
Marheineke K, Krude T (Jun 1998). "Nucleosome assembly activity and intracellular localization of human CAF-1 changes during the cell division cycle". The Journal of Biological Chemistry. 273 (24): 15279–86. doi:10.1074/jbc.273.24.15279. PMID 9614144.
Martini E, Roche DM, Marheineke K, Verreault A, Almouzni G (Nov 1998). "Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells". The Journal of Cell Biology. 143 (3): 563–75. doi:10.1083/jcb.143.3.563. PMC 2148138. PMID 9813080.
Hattori M, Fujiyama A, Taylor TD, Watanabe H, Yada T, Park HS, Toyoda A, Ishii K, Totoki Y, Choi DK, Groner Y, Soeda E, Ohki M, Takagi T, Sakaki Y, Taudien S, Blechschmidt K, Polley A, Menzel U, Delabar J, Kumpf K, Lehmann R, Patterson D, Reichwald K, Rump A, Schillhabel M, Schudy A, Zimmermann W, Rosenthal A, Kudoh J, Schibuya K, Kawasaki K, Asakawa S, Shintani A, Sasaki T, Nagamine K, Mitsuyama S, Antonarakis SE, Minoshima S, Shimizu N, Nordsiek G, Hornischer K, Brant P, Scharfe M, Schon O, Desario A, Reichelt J, Kauer G, Blocker H, Ramser J, Beck A, Klages S, Hennig S, Riesselmann L, Dagand E, Haaf T, Wehrmeyer S, Borzym K, Gardiner K, Nizetic D, Francis F, Lehrach H, Reinhardt R, Yaspo ML (May 2000). "The DNA sequence of human chromosome 21". Nature. 405 (6784): 311–9. Bibcode:2000Natur.405..311H. doi:10.1038/35012518. PMID 10830953.
Keller C, Krude T (Nov 2000). "Requirement of Cyclin/Cdk2 and protein phosphatase 1 activity for chromatin assembly factor 1-dependent chromatin assembly during DNA synthesis". The Journal of Biological Chemistry. 275 (45): 35512–21. doi:10.1074/jbc.M003073200. PMID 10938080.
Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (Apr 2002). "Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway". EMBO Reports. 3 (4): 329–34. doi:10.1093/embo-reports/kvf068. PMC 1084056. PMID 11897662.
Morel AP, Sentis S, Bianchin C, Le Romancer M, Jonard L, Rostan MC, Rimokh R, Corbo L (Jul 2003). "BTG2 antiproliferative protein interacts with the human CCR4 complex existing in vivo in three cell-cycle-regulated forms". Journal of Cell Science. 116 (Pt 14): 2929–36. doi:10.1242/jcs.00480. PMID 12771185.
Nabatiyan A, Krude T (Apr 2004). "Silencing of chromatin assembly factor 1 in human cells leads to cell death and loss of chromatin assembly during DNA synthesis". Molecular and Cellular Biology. 24 (7): 2853–62. doi:10.1128/MCB.24.7.2853-2862.2004. PMC 371118. PMID 15024074.
Shim KS, Bergelson JM, Furuse M, Ovod V, Krude T, Lubec G (2003). "Reduction of chromatin assembly factor 1 p60 and C21orf2 protein, encoded on chromosome 21, in Down Syndrome brain". Advances in Down Syndrome Research. Journal of Neural Transmission Supplement 67. Vol. 67. pp. 117–28. doi:10.1007/978-3-7091-6721-2_10. ISBN 978-3-211-40776-9. PMID 15068244. {{cite book}}: |journal= ignored (help)
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (Aug 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
Lin KT, Lu RM, Tarn WY (Oct 2004). "The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo". Molecular and Cellular Biology. 24 (20): 9176–85. doi:10.1128/MCB.24.20.9176-9185.2004. PMC 517884. PMID 15456888.
Groth A, Ray-Gallet D, Quivy JP, Lukas J, Bartek J, Almouzni G (Jan 2005). "Human Asf1 regulates the flow of S phase histones during replicational stress". Molecular Cell. 17 (2): 301–11. doi:10.1016/j.molcel.2004.12.018. PMID 15664198.

External links

Human CHAF1B genome location and CHAF1B gene details page in the UCSC Genome Browser.
Human MPP7 genome location and MPP7 gene details page in the UCSC Genome Browser.

This article on a gene on human chromosome 21 is a stub. You can help Wikipedia by expanding it.

[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000159259 – Ensembl, May 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000022945 – Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid7600578-5] Kaufman PD, Kobayashi R, Kessler N, Stillman B (Jun 1995). "The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication". Cell. 81 (7): 1105–14. doi:10.1016/S0092-8674(05)80015-7. PMID 7600578. S2CID 13502921.

[pmid8792829-6] Katsanis N, Fisher EM (Oct 1996). "The gene encoding the p60 subunit of chromatin assembly factor I (CAF1P60) maps to human chromosome 21q22.2, a region associated with some of the major features of Down syndrome". Human Genetics. 98 (4): 497–9. doi:10.1007/s004390050246. PMID 8792829. S2CID 1206979.

[entrez-7] "Entrez Gene: CHAF1B chromatin assembly factor 1, subunit B (p60)".

[pmid11897662-8] Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (Apr 2002). "Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway". EMBO Reports. 3 (4): 329–34. doi:10.1093/embo-reports/kvf068. PMC 1084056. PMID 11897662.

[pmid17353931-9] Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, Zhang S, Ornatsky O, Bukhman YV, Ethier M, Sheng Y, Vasilescu J, Abu-Farha M, Lambert JP, Duewel HS, Stewart II, Kuehl B, Hogue K, Colwill K, Gladwish K, Muskat B, Kinach R, Adams SL, Moran MF, Morin GB, Topaloglou T, Figeys D (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3: 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.

[pmid12837248-10] Kitagawa H, Fujiki R, Yoshimura K, Mezaki Y, Uematsu Y, Matsui D, Ogawa S, Unno K, Okubo M, Tokita A, Nakagawa T, Ito T, Ishimi Y, Nagasawa H, Matsumoto T, Yanagisawa J, Kato S (Jun 2003). "The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome". Cell. 113 (7): 905–17. doi:10.1016/s0092-8674(03)00436-7. PMID 12837248.

[5]

CHAF1B

Contents

Function

Interactions

References

Further reading

External links