Zymomonas mobilis

Zymomonas is an unwanted waterborn bacteria in beer, creating an estery-sulfury flavor due to the production of acetaldehyde and hydrogen sulfide. This can be likened to a rotten apple smell or fruity odor. Zymomonas have not been reported in lager breweries due to the low temperatures (8–12 °C) and stringent carbohydrate requirements (able to ferment only sucrose, glucose, and fructose). It is commonly found in cask-conditioned ales where priming sugar is used to carbonate the beer. The optimum growth temperature is 25 to 30 °C.

Zymomonas mobilis degrades sugars to pyruvate using the Entner–Doudoroff pathway. The pyruvate is then fermented to produce ethanol and carbon dioxide as the only products (analogous to yeast).

The advantages of Z. mobilis over S. cerevisiae with respect to producing bioethanol:

• higher sugar uptake and ethanol yield (up to 2.5 times higher),^[3]
• lower biomass production,
• higher ethanol tolerance up to 16% (v/v),^[4]
• does not require controlled addition of oxygen during the fermentation,

However, in spite of these attractive advantages, several factors prevent the commercial usage of Z. mobilis in cellulosic ethanol production. The foremost hurdle is that its substrate range is limited to glucose, fructose and sucrose. Wild-type Z. mobilis cannot ferment C5 sugars like xylose and arabinose which are important components of lignocellulosic hydrolysates. Unlike E. coli and yeast, Z. mobilis cannot tolerate toxic inhibitors present in lignocellulosic hydrolysates such as acetic acid and various phenolic compounds.^[5] Concentration of acetic acid in lignocellulosic hydrolysates can be as high as 1.5% (w/v), which is well above the tolerance threshold of Z. mobilis.

Several attempts have been made to engineer Z. mobilis to overcome its inherent deficiencies. National Renewable Energy Laboratory (NREL), in the United States has made significant contributions in expanding its substrate range to include C5 sugars like xylose and arabinose.^[6][7] Acetic acid resistant strains of Z. mobilis have been developed by rational metabolic engineering efforts, mutagenesis techniques ^[8] or adaptive mutation.^[9][10] However, when these engineered strains metabolize mixed sugars in presence of inhibitors, the yield and productivity are much lower, thus preventing their industrial application.

An extensive adaptation process was used to improve xylose fermentation in Z. mobilis.^[9] By adapting a strain in a high concentration of xylose, significant alterations of metabolism occurred. One noticeable change was reduced levels of xylitol, a byproduct of xylose fermentation which can inhibit the strain’s xylose metabolism. One of the reasons for lower xylitol production was mutation in a putative gene encoding for an aldo-keto reductase that catalyzes the reduction of xylose to xylitol.^[11][12]

Z. mobilis's plasma membrane contains hopanoids, pentacyclic compounds similar to eukaryotic sterols. This allows it to have an extraordinary tolerance to ethanol in its environment, around 13%.

Zymomonas mobilis is traditionally used to make pulque.

The genome of Z. mobilis strain ZM4 has been sequenced and contains 2,056,416 bp encoding 1,998 protein coding genes.^[13] This revealed that Z. mobilis can only metabolise glucose via the Entner–Doudoroff pathway and is not capable of using the Embden–Meyerhof–Parnas pathway.

• Ethanol fermentation technology—Zymomonas mobilis
• Zymomonas mobilis ZM4 genome page
• Type strain of Zymomonas mobilis at BacDive - the Bacterial Diversity Metadatabase