Vertebrate Chromosome Evolution
- PMID: 33186504
- DOI: 10.1146/annurev-animal-020518-114924
Vertebrate Chromosome Evolution
Abstract
The study of chromosome evolution is undergoing a resurgence of interest owing to advances in DNA sequencing technology that facilitate the production of chromosome-scale whole-genome assemblies de novo. This review focuses on the history, methods, discoveries, and current challenges facing the field, with an emphasis on vertebrate genomes. A detailed examination of the literature on the biology of chromosome rearrangements is presented, specifically the relationship between chromosome rearrangements and phenotypic evolution, adaptation, and speciation. A critical review of the methods for identifying, characterizing, and visualizing chromosome rearrangements and computationally reconstructing ancestral karyotypes is presented. We conclude by looking to the future, identifying the enormous technical and scientific challenges presented by the accumulation of hundreds and eventually thousands of chromosome-scale assemblies.
Keywords: adaptation; chromosome evolution; comparative genomics; speciation; vertebrates.
Similar articles
-
Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).Genes (Basel). 2021 Jan 19;12(1):124. doi: 10.3390/genes12010124. Genes (Basel). 2021. PMID: 33478118 Free PMC article. Review.
-
Tracing the evolution of amniote chromosomes.Chromosoma. 2014 Jun;123(3):201-16. doi: 10.1007/s00412-014-0456-y. Epub 2014 Mar 25. Chromosoma. 2014. PMID: 24664317 Free PMC article. Review.
-
De novo genome assembly of the cichlid fish Astatotilapia latifasciata reveals a higher level of genomic polymorphism and genes related to B chromosomes.Chromosoma. 2019 Jun;128(2):81-96. doi: 10.1007/s00412-019-00707-7. Epub 2019 May 21. Chromosoma. 2019. PMID: 31115663
-
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.Genome Res. 2007 Sep;17(9):1254-65. doi: 10.1101/gr.6316407. Epub 2007 Jul 25. Genome Res. 2007. PMID: 17652425 Free PMC article.
-
Chromosomics: Bridging the Gap between Genomes and Chromosomes.Genes (Basel). 2019 Aug 20;10(8):627. doi: 10.3390/genes10080627. Genes (Basel). 2019. PMID: 31434289 Free PMC article. Review.
Cited by
-
Comparative Genomics of the World's Smallest Mammals Reveals Links to Echolocation, Metabolism, and Body Size Plasticity.Genome Biol Evol. 2024 Nov 1;16(11):evae225. doi: 10.1093/gbe/evae225. Genome Biol Evol. 2024. PMID: 39431406 Free PMC article.
-
Chromosome-Level Genome Assembly for the Chinese Serow (Capricornis milneedwardsii) Provides Insights Into Its Taxonomic Status and Evolution.Ecol Evol. 2024 Oct 9;14(10):e70400. doi: 10.1002/ece3.70400. eCollection 2024 Oct. Ecol Evol. 2024. PMID: 39385836 Free PMC article.
-
Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca.PLoS One. 2024 Aug 9;19(8):e0303408. doi: 10.1371/journal.pone.0303408. eCollection 2024. PLoS One. 2024. PMID: 39121089 Free PMC article.
-
A genomic hotspot of diversifying selection and structural change in the hoary bat (Lasiurus cinereus).PeerJ. 2024 May 31;12:e17482. doi: 10.7717/peerj.17482. eCollection 2024. PeerJ. 2024. PMID: 38832043 Free PMC article.
-
Complete telomere-to-telomere genomes uncover virulence evolution conferred by chromosome fusion in oomycete plant pathogens.Nat Commun. 2024 May 30;15(1):4624. doi: 10.1038/s41467-024-49061-y. Nat Commun. 2024. PMID: 38816389 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources